New Publication: Click Chemistry of PBDs

New Publication: Click Chemistry of PBDs

We are delighted to share that our latest research has been published in Chemistry – A European Journal. The study highlights a promising new route to develop pyrrolo[2,1-c][1,4]benzodiazepine (PBD)-based DNA binders using the powerful tools of click chemistry.

PBDs are a class of small molecules known for their ability to covalently bind and cross-link DNA strands—an established mechanism used in anticancer therapy. They are already deployed as potent payloads in antibody-drug conjugates (ADCs). However, generating diverse and effective PBD dimers has traditionally been a complex process.

In this work, our team demonstrated that copper-catalyzed and strain-promoted azide–alkyne cycloadditions (SPAACs) provide a simple and efficient method to prepare PBD heterodimers.

Key Findings

  • DNA Binding & Cross-Linking: Using thermal denaturation analysis, mass spectrometry, and DNase I footprinting, we confirmed strong DNA binding and covalent cross-linking activity of the synthesized dimers.
  • Potent Biological Activity: One heterodimer showed remarkable DNA cross-linking and induced strong cytotoxicity in cancer cell lines, underscoring its therapeutic potential.
  • Future Applications: The results point to the feasibility of generating PBD dimers inside living cells, opening a pathway for new strategies in targeted drug development.
image-1024x536 New Publication: Click Chemistry of PBDs
Structures and mechanism of action of selected pyrrolo[2,1-c][1,4]benzodiazepines. A) Structures of the natural products anthramycin and tomaymycin, the synthetic analog nor-tomaymycin, the dimer SJG-136, and the antibody-drug conjugate loncastuximab tesirine, which contains the PBD dimer SG3199 as its payload. B) Covalent DNA adduct formation by tomaymycin with the guanine base of DNA. C) DNA cross-linking by SJG-136.

Why It Matters

This study positions click chemistry as a powerful enabler for rapidly expanding the chemical diversity of PBD-based compounds. The approach not only simplifies synthesis but also creates opportunities for designing next-generation anticancer agents with high precision and potency.

We believe this work provides an important step toward advancing DNA-binding therapeutics and broadening the toolkit for cancer drug discovery.

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